Recent Publications

SeqMatic’s products and services has been cited in dozens of research publications from around the world.

2017

Kutnjak, Denis, Santiago F. Elena, and Maja Ravnikar. “Time-sampled population sequencing reveals the interplay of selection and genetic drift in experimental evolution of Potato virus Y.Journal of Virology (2017): JVI-00690.

Nemchinov, Lev G., Samuel C. Grinstead, and Dimitre S. Mollov. “Alfalfa virus S, a new species in the family Alphaflexiviridae.PloS one 12.5 (2017): e0178222.

Wu, L-P., et al. “Molecular characterization of a novel luteovirus from peach identified by high-throughput sequencing.Archives of Virology (2017): 1-3.

Liu, Meiyan, et al. “The STENOFOLIA gene from Medicago alters leaf width, flowering time and chlorophyll content in transgenic wheat.Plant Biotechnology Journal (2017).

Kriznik, Maja, et al. “Tolerance To PVY Infection In Potato Is Conditioned By Perturbation Of Small RNA-Gibberellin Regulatory Network.” bioRxiv (2017): 130757.

Doan, Thuy, et al. “Gut Microbial Diversity in Antibiotic-Naive Children After Systemic Antibiotic Exposure: A Randomized Controlled Trial.” Clinical Infectious Diseases 64.9 (2017): 1147-1153.

Vaughn, Alexandra C., et al. “Energy-dense diet triggers changes in gut microbiota, reorganization of gut-brain vagal communication and increases body fat accumulation.” Acta neurobiologiae experimentalis 77.1 (2017): 18.

Niu, Jinzhi, et al. “Infections of virulent and avirulent viruses differentially influenced the expression of dicer-1, ago-1, and microRNAs in Bombus terrestris.” Scientific Reports 7 (2017).

Phua, Terri, et al. “Angiopoietin-like 4 Mediates Colonic Inflammation by Regulating Chemokine Transcript Stability via Tristetraprolin.Scientific Reports 7 (2017).

Sen, Tanusree, et al. “Diet-driven microbiota dysbiosis is associated with vagal remodeling and obesity.Physiology & Behavior (2017).

Maker, Allison, et al. “Draft Genome Sequence of Hydrogenibacillus schlegelii MA48, a Deep-Branching Member of the Bacilli Class of Firmicutes.Genome Announcements 5.3 (2017): e00380-16.

2016

Grasedieck, Sarah, et al. “Towards Stratification of Lymphomas with Involvement of the Central Nervous System Using miRNA-Seq from Small Volumes of Cerebrospinal Fluid.Blood 128.22 (2016): 1751-1751.

Koyama, Satoshi, et al. “Dynamic changes of serum microRNA‐122‐5p through therapeutic courses indicates amelioration of acute liver injury accompanied by acute cardiac decompensation.ESC Heart Failure (2016).

Leung, Marcus HY, Kelvin CK Chan, and Patrick KH Lee. “Skin fungal community and its correlation with bacterial community of urban Chinese individuals.Microbiome 4.1 (2016): 46.

Van Goethem, Alan, et al. “Depletion of tRNA-halves enables effective small RNA sequencing of low-input murine serum samples.Scientific Reports 6 (2016): 37876.

Khankhum, Surasak, et al. “RNAseq Analysis of Endornavirus-Infected vs. Endornavirus-Free Common Bean (Phaseolus vulgaris) Cultivar Black Turtle Soup.Frontiers in Microbiology 7 (2016): 1905.

Haney, Staci L., et al. “Dnmt3a Is a Haploinsufficient Tumor Suppressor in CD8+ Peripheral T Cell Lymphoma.PLoS Genet 12.9 (2016): e1006334.

Haney, Staci L., et al. “Loss of Dnmt3a induces CLL and PTCL with distinct methylomes and transcriptomes in mice.Scientific Reports 6 (2016).

Al Rwahnih, Maher, et al. “Description of a Novel Monopartite Geminivirus and Its Defective Subviral Genome in Grapevine.Phytopathology (2016): PHYTO-07.

Schafleitner, Roland, et al. “Identification of single nucleotide polymorphism markers associated with resistance to bruchids (Callosobruchus spp.) in wild mungbean (Vigna radiata var. sublobata) and cultivated V. radiata through genotyping by sequencing and quantitative trait locus analysis.BMC Plant Biology 16.1 (2016): 159.

Obradović, Davor, et al. “A Cytolethal Distending Toxin Variant from Aggregatibacter actinomycetemcomitans with an Aberrant CdtB That Lacks the Conserved Catalytic Histidine 160.PloS one 11.7 (2016): e0159231.

Wang, Juan, et al. “Urea Transporter B and MicroRNA-200c Differ in Kidney Outer versus Inner Medulla following Dehydration.The American Journal of the Medical Sciences (2016).

Theriault, Gabriel, Paul Michael, and Kabwe Nkongolo. “Comprehensive Transcriptome Analysis of Response to Nickel Stress in White Birch (Betula papyrifera).” PloS one 11.4 (2016): e0153762.

Haney, Staci L., et al. “Promoter Hypomethylation and Expression Is Conserved in Mouse Chronic Lymphocytic Leukemia Induced by Decreased or Inactivated Dnmt3a.Cell reports 15.6 (2016): 1190-1201.

Gonzales-Cope, Michelle, et al. “Histone H4 acetylation and the epigenetic reader Brd4 are critical regulators of pluripotency in embryonic stem cells.BMC Genomics 17.1 (2016): 1.

Harp, Djana, et al. “Exosomes derived from endometriotic stromal cells have enhanced angiogenic effects in vitro.Cell and Tissue Research (2016): 1-10.

Groves, Carol, et al. “Seed Transmission of Soybean vein necrosis virus: The First Tospovirus Implicated in Seed Transmission.PLoS One 11.1 (2016).

Niu, Jinzhi, et al. “In vivo study of Dicer-2-mediated immune response of the small interfering RNA pathway upon systemic infections of virulent and avirulent viruses in Bombus terrestris.Insect biochemistry and molecular biology 70 (2016): 127-137.

2015

Al Rwahnih, et al. “First report of Grapevine Pinot gris virus infecting Grapevine in the United States.Plant Disease ja (2015).

Wu, M., et al. “A novel pathway of cellular activation mediated by antiphospholipid antibody‐induced extracellular vesicles.Journal of Thrombosis and Haemostasis 13.10 (2015): 1928-1940.

Hendel, Ayal, et al. “Chemically Modified Guide RNAs Enhance CRISPR-Cas Genome Editing in Human Primary Cells.Nat Biotechnol Nature Biotechnology 33.9 (2015): 985-89. Web.

Hemp, James, et al. “Draft Genome Sequence of Ornatilinea apprima P3M-1, an Anaerobic Member of the Chloroflexi Class Anaerolineae.Genome Announcements 3.6 (2015): e01353-15.

Ward, Lewis M., et al. “Draft Genome Sequence of Leptolinea tardivitalis YMTK-2, a Mesophilic Anaerobe from the Chloroflexi Class Anaerolineae.Genome Announcements 3.6 (2015): e01356-15.

Hemp, James, et al. “Draft Genome Sequence of Levilinea saccharolytica KIBI-1, a Member of the Chloroflexi Class Anaerolineae.Genome Announcements 3.6 (2015): e01357-15.

Hemp, James, et al. “Draft Genome Sequence of Ardenticatena maritima 110S, a Thermophilic Nitrate-and Iron-Reducing Member of the Chloroflexi Class Ardenticatenia.Genome Announcements 3.6 (2015): e01347-15.

Pace, Laura A., et al. “Draft Genome of Thermanaerothrix daxensis GNS-1, a Thermophilic Facultative Anaerobe from the Chloroflexi Class Anaerolineae.Genome Announcements 3.6 (2015): e01354-15.

Ward, Lewis M., et al. “Draft Genome Sequence of Herpetosiphon geysericola GC-42, a Nonphototrophic Member of the Chloroflexi Class Chloroflexia.Genome Announcements 3.6 (2015): e01352-15.

Simpson L, et al. (2015) Comparison of the Mitochondrial Genomes and Steady State Transcriptomes of Two Strains of the Trypanosomatid Parasite, Leishmania tarentolae. PLoS Negl Trop Dis 9(7): e0003841. doi:10.1371/journal.pntd.0003841

Shechner, David M., et al. “Multiplexable, locus-specific targeting of long RNAs with CRISPR-Display.Nature methods 12.7 (2015): 664-670.

Peterson, M. F., et al. (2015). Integrated systems for exosome investigation. Methods.

Supplement, C. (2015). Abstracts from the Fourth International Meeting of ISEV, ISEV2015, Washington, D.C., USA, 23-26 April 2015. Journal Of Extracellular Vesicles, 4. Retrieved from http://www.journalofextracellularvesicles.net/index.php/jev/article/view/27783

Bostwick, W. (2015, March 25). My Quest to Reengineer a Legendary Beer in a Dirty Kitchen. Retrieved from Wired Magazine: http://www.wired.com/2015/03/the-very-best-beer/

2014

Tavormina, Patricia L., et al. “Methyloprofundus sedimenti gen. nov., sp. nov., an obligate methanotroph from ocean sediment belonging to the ‘deep sea-1’ clade of marine methanotrophs.” International journal of systematic and evolutionary microbiology 65.1 (2015): 251-259.

Marques, T. M. (2014). Sequenciamento global de microRNAS em soro de medula óssea ao diagnóstico e ao seguimento do tratamento de leucemia linfoide aguda (LLA).

2013

Merga, J. Yvette, et al. “Complete genome sequence of the Arcobacter butzleri cattle isolate 7h1h.Genome announcements 1.4 (2013): e00655-13.

Lee H, Lee D and Chan K Next Generation Sequencing Sample Preparation Utilizing the Echo® Liquid Handler

Lee D and Chan K miRNA Sequencing with RNAstable ® and SeqMatic miRNA kit