SeqMatic’s products and services has been cited in dozens of research publications from around the world.
Ding, Xia, et al. “PARP1-SNAI2 transcription axis drives resistance to PARP inhibitor, Talazoparib.” Scientific Reports 12.1 (2022): 1-19.
Doski, Shadin, et al. “Complete sequence and genome characterization of a new potexvirus isolated from Chaenostoma cordatum.” Archives of Virology (2022): 1-4.
Santos, Dulce, et al. “PIWI Proteins Play an Antiviral Role in Lepidopteran Cell Lines.” Viruses 14.7 (2022): 1442.
Van den Brande, Stijn, et al. “Identification and profiling of stable microRNAs in hemolymph of young and old Locusta migratoria fifth instars.” Current Research in Insect Science (2022): 100041.
Lavagi-Craddock, Irene, et al. “Transcriptome Analysis of Citrus Dwarfing Viroid Induced Dwarfing Phenotype of Sweet Orange on Trifoliate Orange Rootstock.” Microorganisms 10.6 (2022): 1144.
Nair, Anup K., et al. “Generation of Isogenic hiPSCs with Targeted Edits at Multiple Intronic SNPs to Study the Effects of the Type 2 Diabetes Associated KCNQ1 Locus in American Indians.” Cells 11.9 (2022): 1446.
Wedge, Marie-Eve, et al. “Virally programmed extracellular vesicles sensitize cancer cells to oncolytic virus and small molecule therapy.” Nature communications 13.1 (2022): 1-16.
Pavani, Krishna Chaitanya, et al. “Hatching is modulated by microRNA-378a-3p derived from extracellular vesicles secreted by blastocysts.” Proceedings of the National Academy of Sciences 119.12 (2022): e2122708119.
Kim, Ji Min, et al. “Tonsil mesenchymal stem cells-derived extracellular vesicles prevent submandibular gland dysfunction in ovariectomized rats.” Aging (Albany NY) 14.5 (2022): 2194.
Holmes, Ann E., and Wim J. Kimmerer. “Phytoplankton prey of an abundant estuarine copepod identified in situ using DNA metabarcoding.” Journal of Plankton Research (2022).
Kim, Harper S., et al. “Gut-and oral-dysbiosis differentially impact spinal-and bulbar-onset ALS, predicting ALS severity and potentially determining the location of disease onset.” BMC neurology 22.1 (2022): 1-19.
Wang, Peng, et al. “Exosomes Derived from Epidermal Stem Cells Improve Diabetic Wound Healing.” Journal of Investigative Dermatology (2022).
Eichmeier, Ales, et al. “Conserved MicroRNAs in Human Nasopharynx Tissue Samples from Swabs Are Differentially Expressed in Response to SARS-CoV-2.” Genes 13.2 (2022): 348.
Naphade, Swati, et al. “Systematic comparative analysis of strand-specific RNA-seq library preparation methods for low input samples.” Scientific Reports 12.1 (2022): 1-10.
Ramos, Tiago, et al. “Epithelial Cell-Derived Extracellular Vesicles Trigger the Differentiation of Two Epithelial Cell Lines.” International Journal of Molecular Sciences 23.3 (2022): 1718.
Zhu, Hongyao, et al. “Understanding Data Noise and Uncertainty through Analysis of Replicate Samples in DNA-Encoded Library Selection.” Journal of Chemical Information and Modeling (2021).
Rivarez, Mark Paul Selda, et al. “First Report of Ranunculus white mottle ophiovirus in Slovenia in Pepper with yellow leaf curling symptom and in Tomato.” Plant Disease ja (2021).
Lal, Arnav, et al. “Comparison of RNA content from hydrophobic interaction chromatography‐isolated seminal plasma exosomes from intrauterine insemination (IUI) pregnancies.” Andrologia (2021): e14325.
Didion, Elise M., Megan Doyle, and Joshua B. Benoit. “Bacterial Communities of Lab and Field Northern House Mosquitoes (Diptera: Culicidae) Throughout Diapause.” Journal of Medical Entomology (2021).
Barreiro, Karina, et al. “Urinary extracellular vesicles: Assessment of pre‐analytical variables and development of a quality control with focus on transcriptomic biomarker research.” Journal of extracellular vesicles 10.12 (2021): e12158.
Misra, Namita, et al. “Multi-omics analysis to decipher the molecular link between chronic exposure to pollution and human skin dysfunction.” Scientific reports 11.1 (2021): 1-18.
Tiffany, Connor R., et al. “The metabolic footprint of Clostridia and Erysipelotrichia reveals their role in depleting sugar alcohols in the cecum.” Microbiome 9.1 (2021): 1-13.
Dijkhuizen, Laura W., et al. “Far-Red Light-Induced Azolla filiculoides Symbiosis Sexual Reproduction: Responsive Transcripts of Symbiont Nostoc azollae Encode Transporters Whilst Those of the Fern Relate to the Angiosperm Floral Transition.” Frontiers in plant science 12 (2021).
Gavrili, Vasileia, et al. “First report of barley virus G infecting corn in Greece.” Journal of Plant Pathology (2021): 1-1.
Parekh, Mohit, et al. “Extracellular Vesicles Derived From Human Corneal Endothelial Cells Inhibit Proliferation of Human Corneal Endothelial Cells.” (2021).
Patterson Rosa, Laura, et al. “Two Variants of KIT Causing White Patterning in Stock-Type Horses.” Journal of Heredity (2021).
Aldinger, Kimberly A., et al. “Spatial and cell type transcriptional landscape of human cerebellar development.” Nature Neuroscience (2021): 1-13.
Tong, Cindy BS, et al. “Alleviation of Postharvest Skin Dimpling of MN55 Apple Fruit and a Possible Association with Apple stem pitting virus.” HortScience 1.aop (2021): 1-6.
Abdelrhim, Abdelrazek S., et al. “A new Streptomyces scabies-infecting bacteriophage from Egypt with promising biocontrol traits.” Archives of Microbiology (2021): 1-10.
Bolus, Stephen, et al. “Completion of Maize Stripe Virus Genome Sequence and Analysis of Diverse Isolates.” Frontiers in Microbiology 12 (2021).
Pierce, Lisa M., and Wendy E. Kurata. “Priming With Toll-Like Receptor 3 Agonist Poly (I: C) Enhances Content of Innate Immune Defense Proteins but Not MicroRNAs in Human Mesenchymal Stem Cell-Derived Extracellular Vesicles.” Frontiers in cell and developmental biology 9 (2021).
Dang, Tyler, et al. “Next-Generation Sequencing Identification and Characterization of MicroRNAs in Dwarfed Citrus Trees Infected With Citrus Dwarfing Viroid in High-Density Plantings.” Frontiers in Microbiology 12 (2021): 980.
Yu, Jinjin, Siang Nee Tang, and Patrick KH Lee. “Microbial Communities in Full-Scale Wastewater Treatment Systems Exhibit Deterministic Assembly Processes and Functional Dependency over Time.” Environmental Science & Technology 55.8 (2021): 5312-5323.
Vucurovic, Ana, et al. “Detection of Four New Tomato Viruses in Serbia using Post-Hoc High-Throughput Sequencing Analysis of Samples from a Large-Scale Field Survey.” Plant Disease ja (2021).
Huang, Chun-Yuh, et al. “Anti-Inflammatory Effects of Conditioned Medium of Periodontal Ligament-Derived Stem Cells on Chondrocytes, Synoviocytes, and Meniscus Cells.” Stem Cells and Development (2021).
Erasmus, M. Frank, et al. “A single donor is sufficient to produce a highly functional in vitro antibody library.” Communications biology 4.1 (2021): 1-16.
Huo, Jun-Yu, et al. “Renal denervation attenuates neuroinflammation in the brain by regulating gut-brain axis in rats with myocardial infarction.” Frontiers in Cardiovascular Medicine 8 (2021).
Jordan, Ramon, et al. “First complete genome sequence of carnation latent virus, the type member of the genus Carlavirus.” Archives of Virology (2021): 1-5.
GZ, Kunz Isabelle, et al. “The pelvic flexure separates distinct microbial communities in the equine hindgut.” Scientific Reports (Nature Publisher Group) 11.1 (2021).
Hincapie, Martha, et al. “Eight species of Poaceae are hosting different genetic and pathogenic strains of Sugarcane mosaic virus in the Everglades Agricultural Area.” Phytopathology ja (2021).
Reed, Kailee J., et al. “The pelvic flexure separates distinct microbial communities in the equine hindgut.” Scientific Reports 11.1 (2021): 4332-4332.
Strings-Ufombah, Vanessa, et al. “BB-301: A Silence and Replace AAV-Based Vector for the Treatment of Oculopharyngeal Muscular Dystrophy.” Molecular Therapy-Nucleic Acids (2021).
Crespo-Garcia, Sergio, et al. “Pathological angiogenesis in retinopathy engages cellular senescence and is amenable to therapeutic elimination via BCL-xL inhibition.” Cell Metabolism (2021).
Duan, Huiquan, et al. “Genome Sequence of a Novel Soil Actinomycete, Protaetiibacter sp. Strain SSC-01.” Microbiology Resource Announcements 10.5 (2021).
Macey, J. Robert, et al. “Evidence of two deeply divergent co-existing mitochondrial genomes in the Tuatara reveals an extremely complex genomic organization.” Communications Biology 4.1 (2021): 1-10.
Cambier, Linda, et al. “Extracellular vesicle-associated repetitive element DNAs as candidate osteosarcoma biomarkers.” Scientific reports 11.1 (2021): 1-15.
Xia, Dan, et al. “Fibrillar Aβ causes profound microglial metabolic perturbations in a novel APP knock-in mouse model.” bioRxiv (2021).
Walter, Marius, Rosalba Perrone, and Eric Verdin. “Targeting evolutionary conserved sequences circumvents the evolution of resistance in a viral gene drive against human cytomegalovirus.” bioRxiv (2021).
Chen, Qing, et al. “Paneth cell–derived growth factors support tumorigenesis in the small intestine.” Life Science Alliance 4.3 (2020).
Moriano-Gutierrez, Silvia, et al. “The noncoding small RNA SsrA is released by Vibrio fischeri and modulates critical host responses.” PLoS biology 18.11 (2020): e3000934.
Liu, Cambrian Y., et al. “TNF Receptor 1 Promotes Early-Life Immunity and Protects against Colitis in Mice.” Cell Reports 33.3 (2020): 108275.
Bolus, Stephen, et al. “Identification and characterization of Miscanthus yellow fleck virus, a new polerovirus infecting Miscanthus sinensis.” Plos one 15.9 (2020): e0239199.
Kalubi, Kersey, et al. “Low stringency tests revealed differential gene expression in red maple (Acer rubrum) treated with low doses of nickel.” Plant Gene 24 (2020): 100251.
Rogers, Scott W., Elizabeth J. Myers, and Lorise C. Gahring. “Age-Associated Tooth Loss and Oral Microbial Dysbiosis in a Mouse Genetic Model of Chronic Nicotine Exposure.” Frontiers in Immunology 11 (2020): 2508.
Boukari, Wardatou, et al. “Screening for sugarcane yellow leaf virus in sorghum in Florida revealed its occurrence in mixed infections with sugarcane mosaic virus and a new marafivirus.” Crop Protection 139 (2020): 105373.
Wu, Hao, et al. “Comparative evaluation on the utilization of applied electrical potential in a conductive granule packed biotrickling filter for continuous abatement of xylene: Performance, limitation, and microbial community.” Journal of Environmental Management 274 (2020): 111145.
Ward, Lewis M., Woodward W. Fischer, and Shawn E. McGlynn. “Candidatus Anthektikosiphon siderophilum OHK22, a New Member of the Chloroflexi Family Herpetosiphonaceae from Oku-okuhachikurou Onsen.” Microbes and environments 35.3 (2020): ME20030.
Kim, J. S., et al. “Gut microbiota composition modulates inflammation and structure of the vagal afferent pathway.” Physiology & Behavior 225 (2020): 113082.
Suriben, Rowena, et al. “Antibody-mediated inhibition of GDF15–GFRAL activity reverses cancer cachexia in mice.” Nature Medicine (2020): 1-7.
Martínez-González, Elena, et al. “Comparison of methods and characterization of small RNAs from plasma extracellular vesicles of HIV/HCV coinfected patients.” Scientific reports 10.1 (2020): 1-13.
Aldinger, Kimberly A., et al. “Spatial and single-cell transcriptional landscape of human cerebellar development.” bioRxiv (2020).
Leung, Marcus HY, et al. “Changes of the human skin microbiota upon chronic exposure to polycyclic aromatic hydrocarbon pollutants.” Microbiome 8.1 (2020): 1-17.
Li, Ruhui, et al. “First identification and molecular characterization of a new badnavirus infecting camellia.” Archives of Virology (2020): 1-4.
Nemchinov, Lev, and Samuel Grinstead. “Identification of a novel isolate of Alfalfa virus S from China suggests a possible role of seed contamination in the distribution of the virus.” Plant Disease ja (2020).
Vaskova, Evgeniya, et al. “Sacubitril/Valsartan Improves Cardiac Function and Decreases Myocardial Fibrosis Via Downregulation of Exosomal miR‐181a in a Rodent Chronic Myocardial Infarction Model.” Journal of the American Heart Association 9.13 (2020): e015640.
Olomu, Isoken Nicholas, et al. “Elimination of “kitome” and “splashome” contamination results in lack of detection of a unique placental microbiome.” BMC Microbiology 20.1 (2020): 1-19.
Zheng, Luping, et al. “First identification and molecular characterization of a novel cavemovirus infecting Epiphyllum spp.” Archives of Virology (2020): 1-4.
Bettadapur, Akhila, et al. “Establishment of quantitative RNAi-based forward genetics in Entamoeba histolytica and identification of genes required for growth.” bioRxiv (2020).
McNeal, Andrew S., et al. “MicroRNAs Restrain Proliferation in BRAFV600E Melanocytic Nevi.” bioRxiv (2020).
Zheng, Luping, Madeleine Chen, and Ruhui Li. “Camellia ringspot-associated virus 4, a proposed new foveavirus from Camellia japonica.” Archives of Virology (2020): 1-4.
Mingels, Lina, et al. “Extracellular vesicles spread the RNA interference signal of Tribolium castaneum TcA cells.” Insect Biochemistry and Molecular Biology (2020): 103377.
Sohn, Eun Jung, Hwan Tae Park, and Yoon Kyung Shin. “Exosomes derived from differentiated Schwann cells inhibit Schwann cell migration via microRNAs.” Neuroreport 31.7 (2020): 515-522.
Bloch, Sarah E., et al. “Biological nitrogen fixation in maize: optimizing nitrogenase expression in a root-associated diazotroph.” Journal of Experimental Botany (2020).
Salazar, Carolina, et al. “Detection of cellular miRNAs in plasma of Salmo salar during an ISAV infection.” Aquaculture Reports 17 (2020): 100320.
Watanabe, Shizu, et al. “Identification of Genes That Result in High Mortality of Oryctes rhinoceros (Scarabaeidae: Coleoptera) When Targeted Using an RNA Interference Approach: Implications for Large Invasive Insects.” Annals of the Entomological Society of America (2020).
Li, Chenyu, et al. “High sensitivity detection of SARS-CoV-2 using multiplex PCR and a multiplex-PCR-based metagenomic method.” bioRxiv (2020).
Thapa, Shree P., et al. “Genome‐wide analyses of Liberibacter species provides insights into evolution, phylogenetic relationships, and virulence factors.” Molecular Plant Pathology (2020).
Yu, Wei, et al. “Intestinal flora dysbiosis aggravates cognitive dysfunction associated with neuroinflammation in heart failure.” Journal of Cardiac Failure (2020).
Bačnik, Katarina, et al. “Viromics and infectivity analysis reveal the release of infective plant viruses from wastewater into the environment.” Water Research (2020): 115628.
Kumar, Senthil R., et al. “RNA cargos in extracellular vesicles derived from blood serum in pancreas associated conditions.” Scientific Reports 10.1 (2020): 1-10.
Brewer, Eric, et al. “Discovery and molecular characterization of a novel trichovirus infecting sweet cherry.” Virus Genes (2020): 1-6.
Breusing, Corinna, Maximilian Franke, and Curtis Robert Young. “Intra-host symbiont diversity in eastern Pacific cold seep tubeworms identified by the 16S-V6 region, but undetected by the 16S-V4 region.” PloS one 15.1 (2020): e0227053.
Smits, Katrien, et al. “Maternal Recognition of Pregnancy in the Horse: Are MicroRNAs the Secret Messengers?.” International Journal of Molecular Sciences 21.2 (2020): 419.
Nakamura, Keigo, et al. “Effects of miR-98 in intrauterine extracellular vesicles on maternal immune regulation during the peri-implantation period in cattle.” Scientific Reports 9.1 (2019): 1-10.
Kong, Xue, Yanan Li, and Haibin Zhang. “Adaptation evolution and bioactivity of galectin from the deep sea Vesicomyidae clam Archivesica packardana.” Fish & Shellfish Immunology (2019).
Jiang, Hao, et al. “Differential expression of circulating exosomal microRNAs in refractory intracranial atherosclerosis associated with antiangiogenesis.” Scientific Reports 9.1 (2019): 1-9.
Sakurai, Kenichi, et al. “Association between gut microbiota composition and glycoalbumin level during pregnancy in Japanese women: Pilot study from Chiba Study of Mother and Child Health.” Journal of diabetes investigation (2019).
Chan, E. W., et al. “Investigations of Aerobic Methane Oxidation in Two Marine Seep Environments Part 1: Chemical Kinetics.” Journal of Geophysical Research: Oceans (2019).
Eichmeier, Ales, et al. “MicroRNAs in Vitis vinifera cv. Chardonnay Are Differentially Expressed in Response to Diaporthe Species.” Genes 10.11 (2019): 905.
Stare, Tjaša, et al. “Multiomics analysis of tolerant interaction of potato with potato virus Y.” Scientific Data 6.1 (2019): 1-11.
Sifuentes-Dominguez, Luis F., et al. “SCGN deficiency results in colitis susceptibility.” eLife 8 (2019): e49910.
Wu, L-P., et al. “Complete genomic sequence of tea-oil camellia deltapartitivirus 1, a novel virus from Camellia oleifera.” Archives of virology (2019): 1-5.
Mehle, Natasa, et al. “First report of cucurbit aphid-borne yellows virus in Cucurbita pepo and Cucurbita maxima in Slovenia.” Plant Disease ja (2019).
Valihrach, Lukas, Peter Androvic, and Mikael Kubista. “Circulating miRNA analysis for cancer diagnostics and therapy.” Molecular Aspects of Medicine (2019).
Tan, Shih-hua, et al. “Full genome characterization of 12 citrus tatter leaf virus isolates for the development of a detection assay.” PloS one 14.10 (2019): e0223958.
Kowalski, Caitlin H., et al. “Fungal biofilm morphology impacts hypoxia fitness and disease progression.” Nature microbiology (2019): 1-12.
Ray, Kathryn J., et al. “High-throughput Sequencing of Pooled Samples to Determine Community-Level Microbiome Diversity.” Annals of Epidemiology (2019).
Wu, L., et al. “First identification and molecular characterization of a novel cherry robigovirus.” Archives of virology (2019): 1-4.
Liu, Huawei, et al. “Characterization of three new viruses of the family Betaflexiviridae associated with camellia ringspot disease.” Virus research (2019): 197668.
Lee, Sunhye, et al. “Beneficial Effects of Non-Encapsulated or Encapsulated Probiotic Supplementation on Microbiota Composition, Intestinal Barrier Functions, Inflammatory Profiles, and Glucose Tolerance in High Fat Fed Rats.” Nutrients 11.9 (2019): 1975.
Peng, Hui, et al. “Non-Antibiotic Small Molecule Regulation of Dhfr-Based Destabilizing Domains in Vivo.” Molecular Therapy-Methods & Clinical Development (2019).
Santos, Dulce, et al. “Generation of Virus-and dsRNA-Derived siRNAs with Species-Dependent Length in Insects.” Viruses 11.8 (2019): 738.
Heinicke, Fatima, et al. “Systematic assessment of commercially available low-input miRNA library preparation kits.” bioRxiv (2019): 702456.
Paz Narváez, Iván Enrique, and Juan Carlos Menjivar Flores. “Effect of compost on the rhizospheric bacteria diversity in mulberry (Morus alba) crops.” Revista Colombiana de Biotecnología 21.1 (2019): 47-55.
Naranjo, Leslie, et al. “Recombinant Antibodies against Mycolactone.” Toxins 11.6 (2019): 346.
Olmedo Velarde, Alejandro, et al. “Characterization of Ti ringspot-associated virus, a novel emaravirus associated with an emerging ringspot disease of Cordyline fruticosa (L.).” Plant Disease ja.
Gostinčar, Cene, et al. “Fifty Aureobasidium pullulans genomes.” Environmental microbiology (2019).
Sato, Yumi, et al. “Maternal gut microbiota is associated with newborn anthropometrics in a sex-specific manner.” Journal of Developmental Origins of Health and Disease (2019): 1-8.
Peng, L., et al. “Molecular characterization and detection of two carlaviruses infecting cactus.” Archives of virology (2019): 1-4.
Wang, Bin, et al. “miR-26a Limits Muscle Wasting and Cardiac Fibrosis through Exosome-Mediated microRNA Transfer in Chronic Kidney Disease.” Theranostics 9.7 (2019): 1864.
Wilson, R. Paul, et al. “STAT2 dependent Type I Interferon response promotes dysbiosis and luminal expansion of the enteric pathogen Salmonella Typhimurium.” PLoS pathogens 15.4 (2019): e1007745.
Cornejo-Franco, Juan F., et al. “A new tymovirus isolated from Solanum quitoense: characterization and prevalence in two solanaceous crops in Ecuador.” Plant Disease ja (2019).
Tong, Xinzhao, et al. “Neutral Processes Drive Seasonal Assembly of the Skin Mycobiome.” mSystems 4.2 (2019): e00004-19.
Lin, Xiaoyuan, et al. “Bovine embryo-secreted microRNA-30c is a potential non-invasive biomarker for hampered preimplantation developmental competence.” Frontiers in genetics 10 (2019): 315.
Eichmeier, Ales, et al. “High-throughput small RNA sequencing for evaluation of grapevine sanitation efficacy.” Journal of virological methods (2019).
Mich, John K., and Viviana Gradinaru. “Epigenetic landscape and AAV targeting of human neocortical cell classes.” (2019).
Kunz, Isabelle GZ, et al. “Equine Fecal Microbiota Changes Associated with Anthelmintic Administration.” Journal of Equine Veterinary Science (2019).
Oldenburg, Catherine E., et al. “Indirect effect of azithromycin use on the intestinal microbiome diversity of untreated children: A randomized trial.” Open Forum Infectious Diseases. 2019.
Addy, Hardian Susilo, Abdelmonim Ali Ahmad, and Qi Huang. “Molecular and Biological Characterization of Ralstonia Phage RsoM1USA, a New Species of P2virus, Isolated in the United States.” Frontiers in microbiology 10 (2019).
Bratsch, Sara, et al. “Characterization of Tomato necrotic spot virus, a subgroup 1 ilarvirus causing necrotic foliar, stem, and fruit symptoms in tomatoes in the United States.” Plant Disease ja (2019).
Charrier, Henri, et al. “In vitro characterization of cardiac extracellular vesicles involved in transport of the circulating biomarkers of heart failure miR-21-5p, miR-23a-3p and miR-222-3p.” Journal of Extracellular Vesicles 7 (2018): 44-44.
Kith, Óscar Brochado, et al. “Liver-specific miRNAs are detected in exosomes from HIV/HCV patients.” Journal of Extracellular Vesicles 7 (2018): 44-44.
Zou, Wei, et al. “A Comprehensive RNA-seq Analysis of Human Bocavirus 1 Transcripts in Infected Human Airway Epithelium.” Viruses 11.1 (2019): 33.
Naguib, Adam, et al. “SUPT4H1 Depletion Leads to a Global Reduction in RNA.” Cell reports 26.1 (2019): 45-53.
Laferriere, Nicole R., et al. “Inhibition of microRNA-124-3p as a novel therapeutic strategy for the treatment of Gulf War Illness: Evaluation in a rat model.” Neurotoxicology 71 (2019): 16-30.
Cole, Emily J., et al. “Investigating responses of soil bacterial community composition to hardwood biochar amendment using high-throughput PCR sequencing.” Applied Soil Ecology (2018).
Choi, Song-Yi, et al. “Regulating Osteogenic Differentiation by Suppression of Exosomal microRNAs.” Tissue Engineering ja (2018).
Coates, R. Cameron, et al. “Systematic investigation of CRISPR–Cas9 configurations for flexible and efficient genome editing in Corynebacterium glutamicum NRRL-B11474.” Journal of industrial microbiology & biotechnology (2018): 1-15.
Van den Brande, Stijn, et al. “The presence of extracellular microRNAs in the media of cultured Drosophila cells.” Scientific Reports 8.1 (2018): 17312.
Enjeti, Anoop K., et al. “Circulating microvesicles are less procoagulant and carry different miRNA cargo in myelodysplasia.” Blood Cells, Molecules, and Diseases (2018).
Oldenburg, Catherine E., et al. “Effect of commonly-used pediatric antibiotics on gut microbial diversity in preschool children in Burkina Faso: A randomized clinical trial.” Open Forum Infectious Diseases. 2018.
Wu, Liping, Luping Zheng, and Ruhui Li. “First report of Alternanthera mosaic virus infecting Epiphyllum spp.” Plant Disease ja (2018).
Wintermantel, William M., et al. “First report of Cucurbit chlorotic yellows virus infecting melon in the New World.” Plant Disease ja (2018).
Mehle, Natasa, et al. “First report of Apium virus Y and carrot thin leaf virus in parsley in Slovenia.” Plant Disease ja (2018).
Kong, Xue, et al. “Two novel short peptidoglycan recognition proteins (PGRPs) from the deep sea Vesicomyidae clam Archivesica packardana: identification, recombinant expression and bioactivity.” Frontiers in Physiology 9 (2018): 1476.
Ward, Lewis M., et al. “Thermophilic Lithotrophy and Phototrophy in an Intertidal, Iron-rich, Geothermal Spring.” bioRxiv (2018): 428698.
Addy, Hardian Susilo, et al. “Host range and molecular characterization of a lytic Pradovirus-like Ralstonia phage RsoP1IDN isolated from Indonesia.” Archives of Virology (2018): 1-6.
Zheng, Luping, et al. “Molecular characterization and detection of a new closterovirus identified from blackcurrant by high-throughput sequencing.” Virus genes (2018): 1-5.
Su, Zhen, et al. “Electrically stimulated acupuncture increases renal blood flow through exosomes-carried miR-181.” American Journal of Physiology-Renal Physiology (2018).
Luna, Emily, et al. “Bacteria Associated with Russian Wheat Aphid (Diuraphis noxia) Enhance Aphid Virulence to Wheat.” Phytobiomes ja (2018).
Datta, Kaustubh, et al. “Macrophage-derived Neuropilin-2 exhibits novel tumor-promoting functions.” Cancer research (2018): canres-0562.
Salazar, Carolina, and Sergio H. Marshall. “Involvement of selected cellular miRNAs in the in vitro and in vivo infection of infectious salmon anemia virus (ISAV).” Microbial pathogenesis (2018).
Ward, L. M., S. E. McGlynn, and W. W. Fischer. “Draft Genome Sequences of Two Basal Members of the Anaerolineae Class of Chloroflexi from a Sulfidic Hot Spring.” Genome announcements 6.25 (2018): e00570-18.
Ward, L. M., S. E. McGlynn, and W. W. Fischer. “Draft Genome Sequence of a Divergent Anaerobic Member of the Chloroflexi Class Ardenticatenia from a Sulfidic Hot Spring.” Genome announcements 6.25 (2018): e00571-18.
Wu, Liping, et al. “Structure and Genome Organization of a Novel Fiji Strain of Sweet Potato Vein Clearing Virus Identified by High-Throughput Sequencing.” Genome announcements 6.24 (2018): e00462-18.
Liu, Huawei, et al. “Characterization of a new apple luteovirus identified by high-throughput sequencing.” Virology journal 15.1 (2018): 85.
Gòdia, Marta, et al. “A technical assessment of the porcine ejaculated spermatozoa for a sperm-specific RNA-seq analysis.” Systems biology in reproductive medicine (2018): 1-13.
Nkongolo, Kabwe, Gabriel Theriault, and Paul Michael. “Differential levels of gene expression and molecular mechanisms between red maple (Acer rubrum) genotypes resistant and susceptible to nickel toxicity revealed by transcriptome analysis.” Ecology and Evolution (2018).
Grasedieck, Sarah, et al. “Comprehensive micro RNA expression profiling in cerebrospinal fluid distinguishes between neurological disease classes.” Neuropathology and applied neurobiology (2018).
Gomez-Silvan, Cinta, et al. “A comparison of methods used to unveil the genetic and metabolic pool in the built environment.” Microbiome 6.1 (2018): 71.
Ahmad, Abdelmonim Ali, et al. “Sequencing, genome analysis and host range of a novel Ralstonia phage, RsoP1EGY, isolated in Egypt.” Archives of virology (2018): 1-4.
Carossino, Mariano, et al. “Downregulation of eca-mir-128 in seminal exosomes and enhanced expression of CXCL16 in the stallion reproductive tract are associated with long-term persistence of equine arteritis virus.” Journal of virology (2018): JVI-00015.
Ward, Lewis Michael, et al. “Evolution of Phototrophy in the Chloroflexi Phylum Driven by Horizontal Gene Transfer.” Frontiers in Microbiology 9 (2018): 260.
Wu, L-P., et al. “Molecular characterization of a novel rhabdovirus infecting blackcurrant identified by high-throughput sequencing.” Archives of virology (2018): 1-4.
Rajan, Saravanan, et al. “Recombinant human B cell repertoires enable screening for rare, specific, and natively paired antibodies.” Communications Biology 1.1 (2018): 5.
Chahar, Harendra Singh, et al. “Respiratory Syncytial Virus Infection Changes Cargo Composition of Exosome Released from Airway Epithelial Cells.” Scientific reports 8.1 (2018): 387.
Poff, Kirsten E., et al. “The Native Hawaiian Insect Microbiome Initiative: A Critical Perspective for Hawaiian Insect Evolution.” Insects 8.4 (2017): 130.
Križnik, Maja, et al. “Salicylic acid perturbs sRNA-gibberellin regulatory network in immune response of potato to Potato virus Y infection.” Frontiers in plant science 8 (2017).
Green, Kelsie, et al. “Characterization of a new tymovirus causing stunting and chlorotic mosaic in naranjilla (Solanum quitoense).” Plant Disease ja (2017).
Wang, Yanan, et al. “Genome characterization and distribution of Taro bacilliform CH virus on taro in Hawaii, USA.” European Journal of Plant Pathology (2017): 1-5.
Liu, Haiyan E., et al. “Workflow optimization of whole genome amplification and targeted panel sequencing for CTC mutation detection.” npj Genomic Medicine 2.1 (2017): 34.
Goldford, Joshua E., et al. “Emergent Simplicity in Microbial Community Assembly.” bioRxiv (2017): 205831.
Haridas, Dhanya, et al. “Laboratory growth of denitrifying water column microbial consortia from deep-sea shipwrecks in the northern Gulf of Mexico.” F1000Research 6 (2017).
Eicholtz, Mathhew, et al. “First report of Beet western yellows virus infecting Epiphyllum spp.” Plant Disease ja (2017).
Pecman, Anja, et al. “Next Generation Sequencing for Detection and Discovery of Plant Viruses and Viroids: Comparison of Two Approaches.” Frontiers in Microbiology 8 (2017): 1998.
Ward, Lewis M., Shawn E. McGlynn, and Woodward W. Fischer. “Draft Genome Sequences of a Novel Lineage of Armatimonadetes Recovered from Japanese Hot Springs.” Genome announcements 5.40 (2017): e00820-17.
Ward, Lewis M., Shawn E. McGlynn, and Woodward W. Fischer. “Draft Genome Sequence of Chloracidobacterium sp. CP2_5A, a Phototrophic Member of the Phylum Acidobacteria Recovered from a Japanese Hot Spring.” Genome announcements 5.40 (2017): e00821-17.
Tong, Xinzhao, et al. “City-scale distribution and dispersal routes of mycobiome in residences.” Microbiome 5.1 (2017): 131.
Cherry, Jonathan J., et al. “In vitro and in vivo effects of 2, 4 diaminoquinazoline inhibitors of the decapping scavenger enzyme DcpS: Context-specific modulation of SMN transcript levels.” PloS one 12.9 (2017): e0185079.
Kugadas, Abirami, et al. “Role of Microbiota in Strengthening Ocular Mucosal Barrier Function Through Secretory IgA.” Investigative Ophthalmology & Visual Science 58.11 (2017): 4593-4600.
Wang, Yanan, et al. “Molecular characterization and distribution of two strains of Dasheen mosaic virus on taro in Hawaii, USA.” Plant Disease ja (2017).
Mollov, Dimitre, and Martha Malapi-Wight. “Next Generation Sequencing: a useful tool for detection of sugarcane viruses in quarantine programs.” Proceedings of the International Society of Sugar Cane Technologists. Vol. 29. 2016.
Kriznik, Maja, et al. “Salicylic acid perturbs small RNA-gibberellin regulatory network in immune response of potato to Potato virus Y infection and renders plants tolerant to the pathogen.” bioRxiv (2017): 130757.
Kutnjak, Denis, Santiago F. Elena, and Maja Ravnikar. “Time-sampled population sequencing reveals the interplay of selection and genetic drift in experimental evolution of Potato virus Y.” Journal of Virology (2017): JVI-00690.
Nemchinov, Lev G., Samuel C. Grinstead, and Dimitre S. Mollov. “Alfalfa virus S, a new species in the family Alphaflexiviridae.” PloS one 12.5 (2017): e0178222.
Wu, L-P., et al. “Molecular characterization of a novel luteovirus from peach identified by high-throughput sequencing.” Archives of Virology (2017): 1-3.
Liu, Meiyan, et al. “The STENOFOLIA gene from Medicago alters leaf width, flowering time and chlorophyll content in transgenic wheat.” Plant Biotechnology Journal (2017).
Kriznik, Maja, et al. “Tolerance To PVY Infection In Potato Is Conditioned By Perturbation Of Small RNA-Gibberellin Regulatory Network.” bioRxiv (2017): 130757.
Doan, Thuy, et al. “Gut Microbial Diversity in Antibiotic-Naive Children After Systemic Antibiotic Exposure: A Randomized Controlled Trial.” Clinical Infectious Diseases 64.9 (2017): 1147-1153.
Vaughn, Alexandra C., et al. “Energy-dense diet triggers changes in gut microbiota, reorganization of gut-brain vagal communication and increases body fat accumulation.” Acta neurobiologiae experimentalis 77.1 (2017): 18.
Niu, Jinzhi, et al. “Infections of virulent and avirulent viruses differentially influenced the expression of dicer-1, ago-1, and microRNAs in Bombus terrestris.” Scientific Reports 7 (2017).
Phua, Terri, et al. “Angiopoietin-like 4 Mediates Colonic Inflammation by Regulating Chemokine Transcript Stability via Tristetraprolin.” Scientific Reports 7 (2017).
Sen, Tanusree, et al. “Diet-driven microbiota dysbiosis is associated with vagal remodeling and obesity.” Physiology & Behavior (2017).
Maker, Allison, et al. “Draft Genome Sequence of Hydrogenibacillus schlegelii MA48, a Deep-Branching Member of the Bacilli Class of Firmicutes.” Genome Announcements 5.3 (2017): e00380-16.
Grasedieck, Sarah, et al. “Towards Stratification of Lymphomas with Involvement of the Central Nervous System Using miRNA-Seq from Small Volumes of Cerebrospinal Fluid.” Blood 128.22 (2016): 1751-1751.
Koyama, Satoshi, et al. “Dynamic changes of serum microRNA‐122‐5p through therapeutic courses indicates amelioration of acute liver injury accompanied by acute cardiac decompensation.” ESC Heart Failure (2016).
Leung, Marcus HY, Kelvin CK Chan, and Patrick KH Lee. “Skin fungal community and its correlation with bacterial community of urban Chinese individuals.” Microbiome 4.1 (2016): 46.
Van Goethem, Alan, et al. “Depletion of tRNA-halves enables effective small RNA sequencing of low-input murine serum samples.” Scientific Reports 6 (2016): 37876.
Khankhum, Surasak, et al. “RNAseq Analysis of Endornavirus-Infected vs. Endornavirus-Free Common Bean (Phaseolus vulgaris) Cultivar Black Turtle Soup.” Frontiers in Microbiology 7 (2016): 1905.
Haney, Staci L., et al. “Dnmt3a Is a Haploinsufficient Tumor Suppressor in CD8+ Peripheral T Cell Lymphoma.” PLoS Genet 12.9 (2016): e1006334.
Haney, Staci L., et al. “Loss of Dnmt3a induces CLL and PTCL with distinct methylomes and transcriptomes in mice.” Scientific Reports 6 (2016).
Al Rwahnih, Maher, et al. “Description of a Novel Monopartite Geminivirus and Its Defective Subviral Genome in Grapevine.” Phytopathology (2016): PHYTO-07.
Schafleitner, Roland, et al. “Identification of single nucleotide polymorphism markers associated with resistance to bruchids (Callosobruchus spp.) in wild mungbean (Vigna radiata var. sublobata) and cultivated V. radiata through genotyping by sequencing and quantitative trait locus analysis.” BMC Plant Biology 16.1 (2016): 159.
Obradović, Davor, et al. “A Cytolethal Distending Toxin Variant from Aggregatibacter actinomycetemcomitans with an Aberrant CdtB That Lacks the Conserved Catalytic Histidine 160.” PloS one 11.7 (2016): e0159231.
Wang, Juan, et al. “Urea Transporter B and MicroRNA-200c Differ in Kidney Outer versus Inner Medulla following Dehydration.” The American Journal of the Medical Sciences (2016).
Theriault, Gabriel, Paul Michael, and Kabwe Nkongolo. “Comprehensive Transcriptome Analysis of Response to Nickel Stress in White Birch (Betula papyrifera).” PloS one 11.4 (2016): e0153762.
Haney, Staci L., et al. “Promoter Hypomethylation and Expression Is Conserved in Mouse Chronic Lymphocytic Leukemia Induced by Decreased or Inactivated Dnmt3a.” Cell reports 15.6 (2016): 1190-1201.
Gonzales-Cope, Michelle, et al. “Histone H4 acetylation and the epigenetic reader Brd4 are critical regulators of pluripotency in embryonic stem cells.” BMC Genomics 17.1 (2016): 1.
Harp, Djana, et al. “Exosomes derived from endometriotic stromal cells have enhanced angiogenic effects in vitro.” Cell and Tissue Research (2016): 1-10.
Groves, Carol, et al. “Seed Transmission of Soybean vein necrosis virus: The First Tospovirus Implicated in Seed Transmission.” PLoS One 11.1 (2016).
Niu, Jinzhi, et al. “In vivo study of Dicer-2-mediated immune response of the small interfering RNA pathway upon systemic infections of virulent and avirulent viruses in Bombus terrestris.” Insect biochemistry and molecular biology 70 (2016): 127-137.
Al Rwahnih, et al. “First report of Grapevine Pinot gris virus infecting Grapevine in the United States.” Plant Disease ja (2015).
Wu, M., et al. “A novel pathway of cellular activation mediated by antiphospholipid antibody‐induced extracellular vesicles.” Journal of Thrombosis and Haemostasis 13.10 (2015): 1928-1940.
Hendel, Ayal, et al. “Chemically Modified Guide RNAs Enhance CRISPR-Cas Genome Editing in Human Primary Cells.” Nat Biotechnol Nature Biotechnology 33.9 (2015): 985-89. Web.
Hemp, James, et al. “Draft Genome Sequence of Ornatilinea apprima P3M-1, an Anaerobic Member of the Chloroflexi Class Anaerolineae.” Genome Announcements 3.6 (2015): e01353-15.
Ward, Lewis M., et al. “Draft Genome Sequence of Leptolinea tardivitalis YMTK-2, a Mesophilic Anaerobe from the Chloroflexi Class Anaerolineae.” Genome Announcements 3.6 (2015): e01356-15.
Hemp, James, et al. “Draft Genome Sequence of Levilinea saccharolytica KIBI-1, a Member of the Chloroflexi Class Anaerolineae.” Genome Announcements 3.6 (2015): e01357-15.
Hemp, James, et al. “Draft Genome Sequence of Ardenticatena maritima 110S, a Thermophilic Nitrate-and Iron-Reducing Member of the Chloroflexi Class Ardenticatenia.” Genome Announcements 3.6 (2015): e01347-15.
Pace, Laura A., et al. “Draft Genome of Thermanaerothrix daxensis GNS-1, a Thermophilic Facultative Anaerobe from the Chloroflexi Class Anaerolineae.” Genome Announcements 3.6 (2015): e01354-15.
Ward, Lewis M., et al. “Draft Genome Sequence of Herpetosiphon geysericola GC-42, a Nonphototrophic Member of the Chloroflexi Class Chloroflexia.” Genome Announcements 3.6 (2015): e01352-15.
Simpson L, et al. (2015) Comparison of the Mitochondrial Genomes and Steady State Transcriptomes of Two Strains of the Trypanosomatid Parasite, Leishmania tarentolae. PLoS Negl Trop Dis 9(7): e0003841. doi:10.1371/journal.pntd.0003841
Shechner, David M., et al. “Multiplexable, locus-specific targeting of long RNAs with CRISPR-Display.” Nature methods 12.7 (2015): 664-670.
Peterson, M. F., et al. (2015). Integrated systems for exosome investigation. Methods.
Supplement, C. (2015). Abstracts from the Fourth International Meeting of ISEV, ISEV2015, Washington, D.C., USA, 23-26 April 2015. Journal Of Extracellular Vesicles, 4. Retrieved from http://www.journalofextracellularvesicles.net/index.php/jev/article/view/27783
Bostwick, W. (2015, March 25). My Quest to Reengineer a Legendary Beer in a Dirty Kitchen. Retrieved from Wired Magazine: http://www.wired.com/2015/03/the-very-best-beer/
Lee H, Lee D and Chan K Next Generation Sequencing Sample Preparation Utilizing the Echo® Liquid Handler
Lee D and Chan K miRNA Sequencing with RNAstable ® and SeqMatic miRNA kit