SeqMatic’s products and services has been cited in dozens of research publications from around the world.
Olmedo Velarde, Alejandro, et al. “Characterization of Ti ringspot-associated virus, a novel emaravirus associated with an emerging ringspot disease of Cordyline fruticosa (L.).” Plant Disease ja.
Gostinčar, Cene, et al. “Fifty Aureobasidium pullulans genomes.” Environmental microbiology (2019).
Sato, Yumi, et al. “Maternal gut microbiota is associated with newborn anthropometrics in a sex-specific manner.” Journal of Developmental Origins of Health and Disease (2019): 1-8.
Peng, L., et al. “Molecular characterization and detection of two carlaviruses infecting cactus.” Archives of virology (2019): 1-4.
Wang, Bin, et al. “miR-26a Limits Muscle Wasting and Cardiac Fibrosis through Exosome-Mediated microRNA Transfer in Chronic Kidney Disease.” Theranostics 9.7 (2019): 1864.
Wilson, R. Paul, et al. “STAT2 dependent Type I Interferon response promotes dysbiosis and luminal expansion of the enteric pathogen Salmonella Typhimurium.” PLoS pathogens 15.4 (2019): e1007745.
Cornejo-Franco, Juan F., et al. “A new tymovirus isolated from Solanum quitoense: characterization and prevalence in two solanaceous crops in Ecuador.” Plant Disease ja (2019).
Tong, Xinzhao, et al. “Neutral Processes Drive Seasonal Assembly of the Skin Mycobiome.” mSystems 4.2 (2019): e00004-19.
Lin, Xiaoyuan, et al. “Bovine embryo-secreted microRNA-30c is a potential non-invasive biomarker for hampered preimplantation developmental competence.” Frontiers in genetics 10 (2019): 315.
Eichmeier, Ales, et al. “High-throughput small RNA sequencing for evaluation of grapevine sanitation efficacy.” Journal of virological methods (2019).
Mich, John K., and Viviana Gradinaru. “Epigenetic landscape and AAV targeting of human neocortical cell classes.” (2019).
Kunz, Isabelle GZ, et al. “Equine Fecal Microbiota Changes Associated with Anthelmintic Administration.” Journal of Equine Veterinary Science (2019).
Oldenburg, Catherine E., et al. “Indirect effect of azithromycin use on the intestinal microbiome diversity of untreated children: A randomized trial.” Open Forum Infectious Diseases. 2019.
Addy, Hardian Susilo, Abdelmonim Ali Ahmad, and Qi Huang. “Molecular and Biological Characterization of Ralstonia Phage RsoM1USA, a New Species of P2virus, Isolated in the United States.” Frontiers in microbiology 10 (2019).
Bratsch, Sara, et al. “Characterization of Tomato necrotic spot virus, a subgroup 1 ilarvirus causing necrotic foliar, stem, and fruit symptoms in tomatoes in the United States.” Plant Disease ja (2019).
Charrier, Henri, et al. “In vitro characterization of cardiac extracellular vesicles involved in transport of the circulating biomarkers of heart failure miR-21-5p, miR-23a-3p and miR-222-3p.” Journal of Extracellular Vesicles 7 (2018): 44-44.
Kith, Óscar Brochado, et al. “Liver-specific miRNAs are detected in exosomes from HIV/HCV patients.” Journal of Extracellular Vesicles 7 (2018): 44-44.
Zou, Wei, et al. “A Comprehensive RNA-seq Analysis of Human Bocavirus 1 Transcripts in Infected Human Airway Epithelium.” Viruses 11.1 (2019): 33.
Naguib, Adam, et al. “SUPT4H1 Depletion Leads to a Global Reduction in RNA.” Cell reports 26.1 (2019): 45-53.
Laferriere, Nicole R., et al. “Inhibition of microRNA-124-3p as a novel therapeutic strategy for the treatment of Gulf War Illness: Evaluation in a rat model.” Neurotoxicology 71 (2019): 16-30.
Cole, Emily J., et al. “Investigating responses of soil bacterial community composition to hardwood biochar amendment using high-throughput PCR sequencing.” Applied Soil Ecology (2018).
Choi, Song-Yi, et al. “Regulating Osteogenic Differentiation by Suppression of Exosomal microRNAs.” Tissue Engineering ja (2018).
Coates, R. Cameron, et al. “Systematic investigation of CRISPR–Cas9 configurations for flexible and efficient genome editing in Corynebacterium glutamicum NRRL-B11474.” Journal of industrial microbiology & biotechnology (2018): 1-15.
Van den Brande, Stijn, et al. “The presence of extracellular microRNAs in the media of cultured Drosophila cells.” Scientific Reports 8.1 (2018): 17312.
Enjeti, Anoop K., et al. “Circulating microvesicles are less procoagulant and carry different miRNA cargo in myelodysplasia.” Blood Cells, Molecules, and Diseases (2018).
Oldenburg, Catherine E., et al. “Effect of commonly-used pediatric antibiotics on gut microbial diversity in preschool children in Burkina Faso: A randomized clinical trial.” Open Forum Infectious Diseases. 2018.
Wu, Liping, Luping Zheng, and Ruhui Li. “First report of Alternanthera mosaic virus infecting Epiphyllum spp.” Plant Disease ja (2018).
Wintermantel, William M., et al. “First report of Cucurbit chlorotic yellows virus infecting melon in the New World.” Plant Disease ja (2018).
Mehle, Natasa, et al. “First report of Apium virus Y and carrot thin leaf virus in parsley in Slovenia.” Plant Disease ja (2018).
Kong, Xue, et al. “Two novel short peptidoglycan recognition proteins (PGRPs) from the deep sea Vesicomyidae clam Archivesica packardana: identification, recombinant expression and bioactivity.” Frontiers in Physiology 9 (2018): 1476.
Ward, Lewis M., et al. “Thermophilic Lithotrophy and Phototrophy in an Intertidal, Iron-rich, Geothermal Spring.” bioRxiv (2018): 428698.
Addy, Hardian Susilo, et al. “Host range and molecular characterization of a lytic Pradovirus-like Ralstonia phage RsoP1IDN isolated from Indonesia.” Archives of Virology (2018): 1-6.
Zheng, Luping, et al. “Molecular characterization and detection of a new closterovirus identified from blackcurrant by high-throughput sequencing.” Virus genes (2018): 1-5.
Su, Zhen, et al. “Electrically stimulated acupuncture increases renal blood flow through exosomes-carried miR-181.” American Journal of Physiology-Renal Physiology (2018).
Luna, Emily, et al. “Bacteria Associated with Russian Wheat Aphid (Diuraphis noxia) Enhance Aphid Virulence to Wheat.” Phytobiomes ja (2018).
Datta, Kaustubh, et al. “Macrophage-derived Neuropilin-2 exhibits novel tumor-promoting functions.” Cancer research (2018): canres-0562.
Salazar, Carolina, and Sergio H. Marshall. “Involvement of selected cellular miRNAs in the in vitro and in vivo infection of infectious salmon anemia virus (ISAV).” Microbial pathogenesis (2018).
Ward, L. M., S. E. McGlynn, and W. W. Fischer. “Draft Genome Sequences of Two Basal Members of the Anaerolineae Class of Chloroflexi from a Sulfidic Hot Spring.” Genome announcements 6.25 (2018): e00570-18.
Ward, L. M., S. E. McGlynn, and W. W. Fischer. “Draft Genome Sequence of a Divergent Anaerobic Member of the Chloroflexi Class Ardenticatenia from a Sulfidic Hot Spring.” Genome announcements 6.25 (2018): e00571-18.
Wu, Liping, et al. “Structure and Genome Organization of a Novel Fiji Strain of Sweet Potato Vein Clearing Virus Identified by High-Throughput Sequencing.” Genome announcements 6.24 (2018): e00462-18.
Liu, Huawei, et al. “Characterization of a new apple luteovirus identified by high-throughput sequencing.” Virology journal 15.1 (2018): 85.
Gòdia, Marta, et al. “A technical assessment of the porcine ejaculated spermatozoa for a sperm-specific RNA-seq analysis.” Systems biology in reproductive medicine (2018): 1-13.
Nkongolo, Kabwe, Gabriel Theriault, and Paul Michael. “Differential levels of gene expression and molecular mechanisms between red maple (Acer rubrum) genotypes resistant and susceptible to nickel toxicity revealed by transcriptome analysis.” Ecology and Evolution (2018).
Grasedieck, Sarah, et al. “Comprehensive micro RNA expression profiling in cerebrospinal fluid distinguishes between neurological disease classes.” Neuropathology and applied neurobiology (2018).
Gomez-Silvan, Cinta, et al. “A comparison of methods used to unveil the genetic and metabolic pool in the built environment.” Microbiome 6.1 (2018): 71.
Ahmad, Abdelmonim Ali, et al. “Sequencing, genome analysis and host range of a novel Ralstonia phage, RsoP1EGY, isolated in Egypt.” Archives of virology (2018): 1-4.
Carossino, Mariano, et al. “Downregulation of eca-mir-128 in seminal exosomes and enhanced expression of CXCL16 in the stallion reproductive tract are associated with long-term persistence of equine arteritis virus.” Journal of virology (2018): JVI-00015.
Ward, Lewis Michael, et al. “Evolution of Phototrophy in the Chloroflexi Phylum Driven by Horizontal Gene Transfer.” Frontiers in Microbiology 9 (2018): 260.
Wu, L-P., et al. “Molecular characterization of a novel rhabdovirus infecting blackcurrant identified by high-throughput sequencing.” Archives of virology (2018): 1-4.
Rajan, Saravanan, et al. “Recombinant human B cell repertoires enable screening for rare, specific, and natively paired antibodies.” Communications Biology 1.1 (2018): 5.
Chahar, Harendra Singh, et al. “Respiratory Syncytial Virus Infection Changes Cargo Composition of Exosome Released from Airway Epithelial Cells.” Scientific reports 8.1 (2018): 387.
Poff, Kirsten E., et al. “The Native Hawaiian Insect Microbiome Initiative: A Critical Perspective for Hawaiian Insect Evolution.” Insects 8.4 (2017): 130.
Križnik, Maja, et al. “Salicylic acid perturbs sRNA-gibberellin regulatory network in immune response of potato to Potato virus Y infection.” Frontiers in plant science 8 (2017).
Green, Kelsie, et al. “Characterization of a new tymovirus causing stunting and chlorotic mosaic in naranjilla (Solanum quitoense).” Plant Disease ja (2017).
Wang, Yanan, et al. “Genome characterization and distribution of Taro bacilliform CH virus on taro in Hawaii, USA.” European Journal of Plant Pathology (2017): 1-5.
Liu, Haiyan E., et al. “Workflow optimization of whole genome amplification and targeted panel sequencing for CTC mutation detection.” npj Genomic Medicine 2.1 (2017): 34.
Goldford, Joshua E., et al. “Emergent Simplicity in Microbial Community Assembly.” bioRxiv (2017): 205831.
Haridas, Dhanya, et al. “Laboratory growth of denitrifying water column microbial consortia from deep-sea shipwrecks in the northern Gulf of Mexico.” F1000Research 6 (2017).
Eicholtz, Mathhew, et al. “First report of Beet western yellows virus infecting Epiphyllum spp.” Plant Disease ja (2017).
Pecman, Anja, et al. “Next Generation Sequencing for Detection and Discovery of Plant Viruses and Viroids: Comparison of Two Approaches.” Frontiers in Microbiology 8 (2017): 1998.
Ward, Lewis M., Shawn E. McGlynn, and Woodward W. Fischer. “Draft Genome Sequences of a Novel Lineage of Armatimonadetes Recovered from Japanese Hot Springs.” Genome announcements 5.40 (2017): e00820-17.
Ward, Lewis M., Shawn E. McGlynn, and Woodward W. Fischer. “Draft Genome Sequence of Chloracidobacterium sp. CP2_5A, a Phototrophic Member of the Phylum Acidobacteria Recovered from a Japanese Hot Spring.” Genome announcements 5.40 (2017): e00821-17.
Tong, Xinzhao, et al. “City-scale distribution and dispersal routes of mycobiome in residences.” Microbiome 5.1 (2017): 131.
Cherry, Jonathan J., et al. “In vitro and in vivo effects of 2, 4 diaminoquinazoline inhibitors of the decapping scavenger enzyme DcpS: Context-specific modulation of SMN transcript levels.” PloS one 12.9 (2017): e0185079.
Kugadas, Abirami, et al. “Role of Microbiota in Strengthening Ocular Mucosal Barrier Function Through Secretory IgA.” Investigative Ophthalmology & Visual Science 58.11 (2017): 4593-4600.
Wang, Yanan, et al. “Molecular characterization and distribution of two strains of Dasheen mosaic virus on taro in Hawaii, USA.” Plant Disease ja (2017).
Mollov, Dimitre, and Martha Malapi-Wight. “Next Generation Sequencing: a useful tool for detection of sugarcane viruses in quarantine programs.” Proceedings of the International Society of Sugar Cane Technologists. Vol. 29. 2016.
Kriznik, Maja, et al. “Salicylic acid perturbs small RNA-gibberellin regulatory network in immune response of potato to Potato virus Y infection and renders plants tolerant to the pathogen.” bioRxiv (2017): 130757.
Kutnjak, Denis, Santiago F. Elena, and Maja Ravnikar. “Time-sampled population sequencing reveals the interplay of selection and genetic drift in experimental evolution of Potato virus Y.” Journal of Virology (2017): JVI-00690.
Nemchinov, Lev G., Samuel C. Grinstead, and Dimitre S. Mollov. “Alfalfa virus S, a new species in the family Alphaflexiviridae.” PloS one 12.5 (2017): e0178222.
Wu, L-P., et al. “Molecular characterization of a novel luteovirus from peach identified by high-throughput sequencing.” Archives of Virology (2017): 1-3.
Liu, Meiyan, et al. “The STENOFOLIA gene from Medicago alters leaf width, flowering time and chlorophyll content in transgenic wheat.” Plant Biotechnology Journal (2017).
Kriznik, Maja, et al. “Tolerance To PVY Infection In Potato Is Conditioned By Perturbation Of Small RNA-Gibberellin Regulatory Network.” bioRxiv (2017): 130757.
Doan, Thuy, et al. “Gut Microbial Diversity in Antibiotic-Naive Children After Systemic Antibiotic Exposure: A Randomized Controlled Trial.” Clinical Infectious Diseases 64.9 (2017): 1147-1153.
Vaughn, Alexandra C., et al. “Energy-dense diet triggers changes in gut microbiota, reorganization of gut-brain vagal communication and increases body fat accumulation.” Acta neurobiologiae experimentalis 77.1 (2017): 18.
Niu, Jinzhi, et al. “Infections of virulent and avirulent viruses differentially influenced the expression of dicer-1, ago-1, and microRNAs in Bombus terrestris.” Scientific Reports 7 (2017).
Phua, Terri, et al. “Angiopoietin-like 4 Mediates Colonic Inflammation by Regulating Chemokine Transcript Stability via Tristetraprolin.” Scientific Reports 7 (2017).
Sen, Tanusree, et al. “Diet-driven microbiota dysbiosis is associated with vagal remodeling and obesity.” Physiology & Behavior (2017).
Maker, Allison, et al. “Draft Genome Sequence of Hydrogenibacillus schlegelii MA48, a Deep-Branching Member of the Bacilli Class of Firmicutes.” Genome Announcements 5.3 (2017): e00380-16.
Grasedieck, Sarah, et al. “Towards Stratification of Lymphomas with Involvement of the Central Nervous System Using miRNA-Seq from Small Volumes of Cerebrospinal Fluid.” Blood 128.22 (2016): 1751-1751.
Koyama, Satoshi, et al. “Dynamic changes of serum microRNA‐122‐5p through therapeutic courses indicates amelioration of acute liver injury accompanied by acute cardiac decompensation.” ESC Heart Failure (2016).
Leung, Marcus HY, Kelvin CK Chan, and Patrick KH Lee. “Skin fungal community and its correlation with bacterial community of urban Chinese individuals.” Microbiome 4.1 (2016): 46.
Van Goethem, Alan, et al. “Depletion of tRNA-halves enables effective small RNA sequencing of low-input murine serum samples.” Scientific Reports 6 (2016): 37876.
Khankhum, Surasak, et al. “RNAseq Analysis of Endornavirus-Infected vs. Endornavirus-Free Common Bean (Phaseolus vulgaris) Cultivar Black Turtle Soup.” Frontiers in Microbiology 7 (2016): 1905.
Haney, Staci L., et al. “Dnmt3a Is a Haploinsufficient Tumor Suppressor in CD8+ Peripheral T Cell Lymphoma.” PLoS Genet 12.9 (2016): e1006334.
Haney, Staci L., et al. “Loss of Dnmt3a induces CLL and PTCL with distinct methylomes and transcriptomes in mice.” Scientific Reports 6 (2016).
Al Rwahnih, Maher, et al. “Description of a Novel Monopartite Geminivirus and Its Defective Subviral Genome in Grapevine.” Phytopathology (2016): PHYTO-07.
Schafleitner, Roland, et al. “Identification of single nucleotide polymorphism markers associated with resistance to bruchids (Callosobruchus spp.) in wild mungbean (Vigna radiata var. sublobata) and cultivated V. radiata through genotyping by sequencing and quantitative trait locus analysis.” BMC Plant Biology 16.1 (2016): 159.
Obradović, Davor, et al. “A Cytolethal Distending Toxin Variant from Aggregatibacter actinomycetemcomitans with an Aberrant CdtB That Lacks the Conserved Catalytic Histidine 160.” PloS one 11.7 (2016): e0159231.
Wang, Juan, et al. “Urea Transporter B and MicroRNA-200c Differ in Kidney Outer versus Inner Medulla following Dehydration.” The American Journal of the Medical Sciences (2016).
Theriault, Gabriel, Paul Michael, and Kabwe Nkongolo. “Comprehensive Transcriptome Analysis of Response to Nickel Stress in White Birch (Betula papyrifera).” PloS one 11.4 (2016): e0153762.
Haney, Staci L., et al. “Promoter Hypomethylation and Expression Is Conserved in Mouse Chronic Lymphocytic Leukemia Induced by Decreased or Inactivated Dnmt3a.” Cell reports 15.6 (2016): 1190-1201.
Gonzales-Cope, Michelle, et al. “Histone H4 acetylation and the epigenetic reader Brd4 are critical regulators of pluripotency in embryonic stem cells.” BMC Genomics 17.1 (2016): 1.
Harp, Djana, et al. “Exosomes derived from endometriotic stromal cells have enhanced angiogenic effects in vitro.” Cell and Tissue Research (2016): 1-10.
Groves, Carol, et al. “Seed Transmission of Soybean vein necrosis virus: The First Tospovirus Implicated in Seed Transmission.” PLoS One 11.1 (2016).
Niu, Jinzhi, et al. “In vivo study of Dicer-2-mediated immune response of the small interfering RNA pathway upon systemic infections of virulent and avirulent viruses in Bombus terrestris.” Insect biochemistry and molecular biology 70 (2016): 127-137.
Al Rwahnih, et al. “First report of Grapevine Pinot gris virus infecting Grapevine in the United States.” Plant Disease ja (2015).
Wu, M., et al. “A novel pathway of cellular activation mediated by antiphospholipid antibody‐induced extracellular vesicles.” Journal of Thrombosis and Haemostasis 13.10 (2015): 1928-1940.
Hendel, Ayal, et al. “Chemically Modified Guide RNAs Enhance CRISPR-Cas Genome Editing in Human Primary Cells.” Nat Biotechnol Nature Biotechnology 33.9 (2015): 985-89. Web.
Hemp, James, et al. “Draft Genome Sequence of Ornatilinea apprima P3M-1, an Anaerobic Member of the Chloroflexi Class Anaerolineae.” Genome Announcements 3.6 (2015): e01353-15.
Ward, Lewis M., et al. “Draft Genome Sequence of Leptolinea tardivitalis YMTK-2, a Mesophilic Anaerobe from the Chloroflexi Class Anaerolineae.” Genome Announcements 3.6 (2015): e01356-15.
Hemp, James, et al. “Draft Genome Sequence of Levilinea saccharolytica KIBI-1, a Member of the Chloroflexi Class Anaerolineae.” Genome Announcements 3.6 (2015): e01357-15.
Hemp, James, et al. “Draft Genome Sequence of Ardenticatena maritima 110S, a Thermophilic Nitrate-and Iron-Reducing Member of the Chloroflexi Class Ardenticatenia.” Genome Announcements 3.6 (2015): e01347-15.
Pace, Laura A., et al. “Draft Genome of Thermanaerothrix daxensis GNS-1, a Thermophilic Facultative Anaerobe from the Chloroflexi Class Anaerolineae.” Genome Announcements 3.6 (2015): e01354-15.
Ward, Lewis M., et al. “Draft Genome Sequence of Herpetosiphon geysericola GC-42, a Nonphototrophic Member of the Chloroflexi Class Chloroflexia.” Genome Announcements 3.6 (2015): e01352-15.
Simpson L, et al. (2015) Comparison of the Mitochondrial Genomes and Steady State Transcriptomes of Two Strains of the Trypanosomatid Parasite, Leishmania tarentolae. PLoS Negl Trop Dis 9(7): e0003841. doi:10.1371/journal.pntd.0003841
Shechner, David M., et al. “Multiplexable, locus-specific targeting of long RNAs with CRISPR-Display.” Nature methods 12.7 (2015): 664-670.
Peterson, M. F., et al. (2015). Integrated systems for exosome investigation. Methods.
Supplement, C. (2015). Abstracts from the Fourth International Meeting of ISEV, ISEV2015, Washington, D.C., USA, 23-26 April 2015. Journal Of Extracellular Vesicles, 4. Retrieved from http://www.journalofextracellularvesicles.net/index.php/jev/article/view/27783
Bostwick, W. (2015, March 25). My Quest to Reengineer a Legendary Beer in a Dirty Kitchen. Retrieved from Wired Magazine: http://www.wired.com/2015/03/the-very-best-beer/
Lee H, Lee D and Chan K Next Generation Sequencing Sample Preparation Utilizing the Echo® Liquid Handler
Lee D and Chan K miRNA Sequencing with RNAstable ® and SeqMatic miRNA kit